Transcript: lnc-COX20-2:2

Basic information

LNCipedia transcript ID: lnc-COX20-2:2 
LNCipedia gene ID: lnc-COX20-2
Ensembl Gene ID: ENSG00000273175
Ensembl Transcript ID: ENST00000610145
Location (hg38): chr1:244864738-244865272
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610145.1
Alternative gene names: ENSG00000273175.1; RP11-11N7.4; BX323046.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.6878 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX20-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM36A-2:1
4.0 lnc-FAM36A-2:1
4.1 lnc-FAM36A-2:1
5.0 lnc-FAM36A-2:1
5.1 lnc-OR2G3-32:2
5.2 lnc-COX20-2:2