Transcript: lnc-COX4I1-14:1

Basic information

LNCipedia transcript ID: lnc-COX4I1-14:1 
LNCipedia gene ID: lnc-COX4I1-14
Ensembl Gene ID: ENSG00000260417
Ensembl Transcript ID: ENST00000567093
Location (hg38): chr16:85592266-85595720
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3455 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567093.1; CTD-2542L18.1-001; OTTHUMT00000431720.1; NONHSAT144129
Alternative gene names: ENSG00000260417.1; CTD-2542L18.1; OTTHUMG00000176284.1; AC092127.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.4179 non-coding 
CPAT coding probability 39.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-COX4I1-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0182-1:1
4.0 lnc-KIAA0182-1:1
4.1 lnc-KIAA0182-1:1
5.0 lnc-KIAA0182-1:1
5.1 lnc-COX4I1-9:1
5.2 lnc-COX4I1-14:1