Transcript: lnc-COX7A2L-1:4

Basic information

LNCipedia transcript ID: lnc-COX7A2L-1:4 
LNCipedia gene ID: lnc-COX7A2L-1
Location (hg38): chr2:42365670-42425088
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 811 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000423797.2; AC006038.4-001; OTTHUMT00000327196.2; NONHSAT070327
Alternative gene names: ENSG00000225810.2; AC006038.4; OTTHUMG00000152656.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -283.5375 non-coding 
CPAT coding probability 10.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX7A2L-1:4 no no no no

Available literature

  1. Luo (2015), Epigenetic regulation of lncRNA connects ubiquitin-proteasome system with infection-inflammation in preterm births and preterm premature rupture of membranes., BMC Pregnancy Childbirth


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNG3-1:1
4.0 lnc-COX7A2L-1:4
4.1 lnc-COX7A2L-1:4
5.0 lnc-COX7A2L-1:4
5.1 lnc-MAP4K3-70:1
5.2 lnc-COX7A2L-1:4