Transcript: lnc-COX7A2L-1:7

Basic information

LNCipedia transcript ID: lnc-COX7A2L-1:7 
LNCipedia gene ID: lnc-COX7A2L-1
Location (hg38): chr2:42415428-42425067
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 370 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005137; NONHSAT070334
Alternative gene names: XLOC_002063; linc-COX7A2L-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -616.0828 non-coding 
CPAT coding probability 15.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX7A2L-1:7 no no no no

Available literature

  1. Luo (2015), Epigenetic regulation of lncRNA connects ubiquitin-proteasome system with infection-inflammation in preterm births and preterm premature rupture of membranes., BMC Pregnancy Childbirth


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNG3-1:3
3.1 lnc-KCNG3-1:4
4.0 lnc-COX7A2L-1:7
4.1 lnc-COX7A2L-1:7
5.0 lnc-COX7A2L-1:7
5.1 lnc-MAP4K3-70:4
5.2 lnc-COX7A2L-1:7