Transcript: lnc-COX7C-4:2

Basic information

LNCipedia transcript ID: lnc-COX7C-4:2 
LNCipedia gene ID: lnc-COX7C-4
Ensembl Gene ID: ENSG00000248363
Ensembl Transcript ID: ENST00000510946
Location (hg38): chr5:86353803-86368853
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009436; ENST00000510946; ENST00000510946.1; CTC-261N6.1-002; OTTHUMT00000369672.1; NONHSAT102558; ENST00000510946.5
Alternative gene names: XLOC_004450; linc-COX7C-2; ENSG00000248363; CTC-261N6.1; ENSG00000248363.1; OTTHUMG00000162587.1; ENSG00000248363.5; AC016550.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.5075 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX7C-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COX7C-4:1
3.1 lnc-COX7C-4:2
4.0 lnc-COX7C-4:2
4.1 lnc-COX7C-4:2
5.0 lnc-COX7C-4:2
5.1 lnc-MSH3-43:1
5.2 lnc-COX7C-4:2