Transcript: lnc-CPA1-1:1

Basic information

LNCipedia transcript ID: lnc-CPA1-1:1 
LNCipedia gene ID: lnc-CPA1-1
Location (hg38): chr7:130394096-130395605
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 701 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013589; NONHSAT123342
Alternative gene names: XLOC_006248; linc-MEST-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -301.9836 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPA1-1:1
3.1 lnc-CPA1-1:1
4.0 lnc-CPA1-1:1
4.1 lnc-CPA1-1:1
5.0 lnc-CPA1-1:1
5.1 lnc-CPA1-1:1
5.2 lnc-CPA1-1:1