Transcript: lnc-CPEB2-18:1

Basic information

LNCipedia transcript ID: lnc-CPEB2-18:1 
LNCipedia gene ID: lnc-CPEB2-18
RefSeq ID: NR_033931
Location (hg38): chr4:14111968-14140052
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1984 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000502759.1; RP11-341G5.3-004; OTTHUMT00000359236.2; NONHSAT095591; NR_033931; NR_033931.1
Alternative gene names: ENSG00000248698.1; RP11-341G5.3; OTTHUMG00000160101.2; LINC01085; ENSG00000248698.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.8231 non-coding 
CPAT coding probability 5.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPEB2-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPEB2-4:1
4.0 LINC01085:1
4.1 LINC01085:1
5.0 LINC01085:1
5.1 lnc-USP17L28-38:1
5.2 lnc-CPEB2-18:1