Transcript: lnc-CPEB2-18:3

Basic information

LNCipedia transcript ID: lnc-CPEB2-18:3 
LNCipedia gene ID: lnc-CPEB2-18
Location (hg38): chr4:14111990-14138737
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 823 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000512754.1; RP11-341G5.3-001; OTTHUMT00000359233.1
Alternative gene names: ENSG00000248698.1; RP11-341G5.3; OTTHUMG00000160101.2; LINC01085; ENSG00000248698.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.2487 non-coding 
CPAT coding probability 2.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPEB2-18:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPEB2-4:3
4.0 LINC01085:3
4.1 LINC01085:3
5.0 LINC01085:3
5.1 lnc-USP17L28-38:3
5.2 lnc-CPEB2-18:3