Transcript: lnc-CPEB4-4:2

Basic information

LNCipedia transcript ID: lnc-CPEB4-4:2 
LNCipedia gene ID: lnc-CPEB4-4
Ensembl Gene ID: ENSG00000253955
Ensembl Transcript ID: ENST00000517299
Location (hg38): chr5:173579643-173585068
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1777 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517299.1; CTB-33O18.3-001; OTTHUMT00000372786.1
Alternative gene names: ENSG00000253955.1; CTB-33O18.3; OTTHUMG00000163342.1; AC008663.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.8492 non-coding 
CPAT coding probability 4.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPEB4-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPEB4-4:2
4.0 lnc-CPEB4-4:2
4.1 lnc-CPEB4-4:2
5.0 lnc-CPEB4-4:2
5.1 lnc-ATP6V0E1-26:6
5.2 lnc-CPEB4-4:2