Transcript: lnc-CPEB4-4:4

Basic information

LNCipedia transcript ID: lnc-CPEB4-4:4 
LNCipedia gene ID: lnc-CPEB4-4
Ensembl Gene ID: ENSG00000253955
Ensembl Transcript ID: ENST00000519897
Location (hg38): chr5:173579649-173581612
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1418 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519897.1; CTB-33O18.3-002; OTTHUMT00000372787.1; NONHSAT147369
Alternative gene names: ENSG00000253955.1; CTB-33O18.3; OTTHUMG00000163342.1; AC008663.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.1634 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPEB4-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPEB4-4:4
4.0 lnc-CPEB4-4:4
4.1 lnc-CPEB4-4:4
5.0 lnc-CPEB4-4:4
5.1 lnc-ATP6V0E1-26:9
5.2 lnc-CPEB4-4:4