Transcript: lnc-CPEB4-5:1

Basic information

LNCipedia transcript ID: lnc-CPEB4-5:1 
LNCipedia gene ID: lnc-CPEB4-5
Ensembl Gene ID: ENSG00000254164
Ensembl Transcript ID: ENST00000520300
Location (hg38): chr5:173574938-173576275
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520300; ENST00000520300.1; CTB-33O18.2-001; OTTHUMT00000372785.1; NONHSAT105193
Alternative gene names: ENSG00000254164; CTB-33O18.2; ENSG00000254164.1; OTTHUMG00000163341.1; AC008663.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.1093 non-coding 
CPAT coding probability 6.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPEB4-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPEB4-5:1
3.1 lnc-CPEB4-5:1
4.0 lnc-CPEB4-5:1
4.1 lnc-CPEB4-5:1
5.0 lnc-CPEB4-5:1
5.1 lnc-ATP6V0E1-25:2
5.2 lnc-CPEB4-5:1