Transcript: lnc-CPN2-4:5

Basic information

LNCipedia transcript ID: lnc-CPN2-4:5 
HGNC Gene Symbol: lnc-CPN2-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2028
Ensembl Gene ID: ENSG00000230102
Ensembl Transcript ID: ENST00000420947
Location (hg38): chr3:194015443-194057679
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420947; ENST00000420947.1; RP11-407B7.1-005; OTTHUMT00000342643.1; NONHSAT094040; ENST00000420947.3
Alternative gene names: ENSG00000230102; RP11-407B7.1; ENSG00000230102.1; OTTHUMG00000155989.1; ENSG00000230102.3; ENSG00000230102.7; LINC02028


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.128 non-coding 
CPAT coding probability 7.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPN2-4:5 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPN2-4:5
3.1 lnc-CPN2-4:5
4.0 lnc-CPN2-4:5
4.1 lnc-CPN2-4:5
5.0 lnc-CPN2-4:5
5.1 lnc-LRRC15-5:40
5.2 lnc-CPN2-4:5