Transcript: lnc-CPO-1:3

Basic information

LNCipedia transcript ID: lnc-CPO-1:3 
LNCipedia gene ID: lnc-CPO-1
Location (hg38): chr2:206881838-206934919
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 236 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00004985
Alternative gene names: XLOC_001823; linc-CPO-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.7884 non-coding 
CPAT coding probability 16.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPO-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPO-1:3
3.1 lnc-CPO-1:3
4.0 lnc-CPO-1:3
4.1 lnc-CPO-1:3
5.0 lnc-CPO-1:3
5.1 lnc-CPS1-45:3
5.2 lnc-CPO-1:3