Transcript: lnc-CPPED1-5:1

Basic information

LNCipedia transcript ID: lnc-CPPED1-5:1 
LNCipedia gene ID: lnc-CPPED1-5
Ensembl Gene ID: ENSG00000262011
Ensembl Transcript ID: ENST00000571611
Location (hg38): chr16:13331368-13332583
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 686 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571611.1; AC003009.1-001; OTTHUMT00000436326.1; NONHSAT140642
Alternative gene names: ENSG00000262011.1; AC003009.1; OTTHUMG00000177335.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.3365 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPPED1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPPED1-5:1
4.0 lnc-CPPED1-5:1
4.1 lnc-CPPED1-5:1
5.0 lnc-CPPED1-5:1
5.1 lnc-PARN-29:1
5.2 lnc-CPPED1-5:1