Transcript: lnc-CPSF7-3:1

Basic information

LNCipedia transcript ID: lnc-CPSF7-3:1 
LNCipedia gene ID: lnc-CPSF7-3
Ensembl Gene ID: ENSG00000256443
Ensembl Transcript ID: ENST00000540906
Location (hg38): chr11:61539516-61542259
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1831 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540906; ENST00000540906.1; RP11-794G24.1-001; OTTHUMT00000398743.1; NONHSAT021685
Alternative gene names: ENSG00000256443; RP11-794G24.1; ENSG00000256443.1; OTTHUMG00000168200.1; AP003559.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.0484 non-coding 
CPAT coding probability 19.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPSF7-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPSF7-3:1
3.1 lnc-CPSF7-3:1
4.0 lnc-CPSF7-3:1
4.1 lnc-CPSF7-3:1
5.0 lnc-CPSF7-3:1
5.1 lnc-LTBP3-159:1
5.2 lnc-CPSF7-3:1