Transcript: lnc-CPT2-2:1

Basic information

LNCipedia transcript ID: lnc-CPT2-2:1 
LNCipedia gene ID: lnc-CPT2-2
Ensembl Gene ID: ENSG00000259818
Ensembl Transcript ID: ENST00000569869
Location (hg38): chr1:53220663-53224253
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3591 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569869.1; RP5-1024G6.7-001; OTTHUMT00000431154.1
Alternative gene names: ENSG00000259818.1; RP5-1024G6.7; OTTHUMG00000175833.1; AL606760.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.0419 non-coding 
CPAT coding probability 4.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPT2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPT2-2:1
4.0 lnc-CPT2-2:1
4.1 lnc-CPT2-2:1
5.0 lnc-CPT2-2:1
5.1 lnc-PODN-4:1
5.2 lnc-CPT2-2:1