Transcript: lnc-CPT2-3:1

Basic information

LNCipedia transcript ID: lnc-CPT2-3:1 
LNCipedia gene ID: lnc-CPT2-3
Ensembl Gene ID: ENSG00000226754
Ensembl Transcript ID: ENST00000458151
RefSeq ID: NR_038953
Location (hg38): chr1:53238610-53242783
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1181 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000458151; ENST00000458151.1; RP5-1024G6.5-001; OTTHUMT00000024756.1; NR_038953; NR_038953.1
Alternative gene names: ENSG00000226754; RP5-1024G6.5; ENSG00000226754.1; OTTHUMG00000008941.1; AL606760.1; LOC100507564


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.2455 non-coding 
CPAT coding probability 26.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPT2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPT2-2:1
3.1 lnc-CPT2-3:1
4.0 lnc-CPT2-3:1
4.1 lnc-CPT2-3:1
5.0 lnc-CPT2-3:1
5.1 lnc-PODN-5:7
5.2 lnc-CPT2-3:1