Transcript: lnc-CPXM2-1:5

Basic information

LNCipedia transcript ID: lnc-CPXM2-1:5 
LNCipedia gene ID: lnc-CPXM2-1
Location (hg38): chr10:123951374-123963320
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3414 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018625; NONHSAT016802
Alternative gene names: XLOC_008979; linc-CPXM2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.4727 non-coding 
CPAT coding probability 44.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CPXM2-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPXM2-2:1
3.1 lnc-CPXM2-2:1
4.0 lnc-CPXM2-1:5
4.1 lnc-CPXM2-1:5
5.0 lnc-CPXM2-1:5
5.1 lnc-UROS-25:2
5.2 lnc-CPXM2-1:5