Transcript: lnc-CPXM2-1:6

Basic information

LNCipedia transcript ID: lnc-CPXM2-1:6 
LNCipedia gene ID: lnc-CPXM2-1
Location (hg38): chr10:123953306-123962870
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1450 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018626; NONHSAT016803
Alternative gene names: XLOC_008979; linc-CPXM2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.2955 non-coding 
CPAT coding probability 24.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPXM2-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPXM2-2:2
3.1 lnc-CPXM2-2:2
4.0 lnc-CPXM2-1:6
4.1 lnc-CPXM2-1:6
5.0 lnc-CPXM2-1:6
5.1 lnc-UROS-25:3
5.2 lnc-CPXM2-1:6