Transcript: lnc-CRABP2-1:2

Basic information

LNCipedia transcript ID: lnc-CRABP2-1:2 
LNCipedia gene ID: lnc-CRABP2-1
Ensembl Gene ID: ENSG00000223356
Ensembl Transcript ID: ENST00000428641
Location (hg38): chr1:156712212-156713174
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 433 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000647; ENST00000428641.1; RP11-66D17.5-001; OTTHUMT00000098965.1; NONHSAT006907
Alternative gene names: XLOC_001048; linc-CRABP2; ENSG00000223356.1; RP11-66D17.5; OTTHUMG00000041299.1; AL590666.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.6745 non-coding 
CPAT coding probability 5.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRABP2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRABP2-1:2
3.1 lnc-CRABP2-1:2
4.0 lnc-CRABP2-1:2
4.1 lnc-CRABP2-1:2
5.0 lnc-CRABP2-1:2
5.1 lnc-PAQR6-20:2
5.2 lnc-CRABP2-1:2