Transcript: lnc-CRBN-1:3

Basic information

LNCipedia transcript ID: lnc-CRBN-1:3 
LNCipedia gene ID: lnc-CRBN-1
Ensembl Gene ID: ENSG00000223727
Ensembl Transcript ID: ENST00000455703
Location (hg38): chr3:3315306-3484097
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 728 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005726; ENST00000455703; ENST00000455703.1; AC026188.1-001; OTTHUMT00000337894.1; NONHSAT087608
Alternative gene names: XLOC_003020; linc-CRBN; ENSG00000223727; AC026188.1; ENSG00000223727.2; OTTHUMG00000154935.6; ENSG00000223727.6; AC034195.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.898 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRBN-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRBN-1:3
3.1 lnc-CRBN-1:3
4.0 lnc-CRBN-1:3
4.1 lnc-CRBN-1:3
5.0 lnc-CRBN-1:3
5.1 lnc-PRRT3-52:3
5.2 lnc-CRBN-1:3