Transcript: lnc-CRIM1-1:1

Basic information

LNCipedia transcript ID: lnc-CRIM1-1:1 
LNCipedia gene ID: lnc-CRIM1-1
Ensembl Gene ID: ENSG00000226994
Ensembl Transcript ID: ENST00000453451
Location (hg38): chr2:34799850-35163112
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002871; ENST00000453451; ENST00000453451.1; AC012593.1-001; OTTHUMT00000325417.2; NONHSAT070052; ENST00000453451.5
Alternative gene names: XLOC_001425; linc-CRIM1-1; ENSG00000226994; AC012593.1; ENSG00000226994.1; OTTHUMG00000152143.2; ENSG00000226994.3; ENSG00000226994.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6177 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRIM1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRIM1-1:1
3.1 lnc-CRIM1-1:1
4.0 lnc-CRIM1-1:1
4.1 lnc-CRIM1-1:1
5.0 lnc-CRIM1-1:1
5.1 lnc-RASGRP3-1:4
5.2 lnc-CRIM1-1:1