Transcript: lnc-CRYBA4-5:1

Basic information

LNCipedia transcript ID: lnc-CRYBA4-5:1 
LNCipedia gene ID: lnc-CRYBA4-5
Ensembl Gene ID: ENSG00000231405
Ensembl Transcript ID: ENST00000430468
Location (hg38): chr22:27143478-27159878
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029399; ENST00000430468; ENST00000430468.1; CTA-992D9.7-001; OTTHUMT00000320625.1; NONHSAT084575
Alternative gene names: XLOC_014194; linc-HSCB-9; ENSG00000231405; CTA-992D9.7; ENSG00000231405.1; OTTHUMG00000150945.1; AL008638.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.8434 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRYBA4-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYBA4-5:1
3.1 lnc-CRYBA4-5:1
4.0 lnc-CRYBA4-5:1
4.1 lnc-CRYBA4-5:1
5.0 lnc-CRYBA4-5:1
5.1 lnc-CABIN1-60:1
5.2 lnc-CRYBA4-5:1