Transcript: lnc-CRYBA4-7:1

Basic information

LNCipedia transcript ID: lnc-CRYBA4-7:1 
LNCipedia gene ID: lnc-CRYBA4-7
Ensembl Gene ID: ENSG00000233574
Ensembl Transcript ID: ENST00000449126
Location (hg38): chr22:27276240-27286349
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 274 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029401; ENST00000449126; ENST00000449126.1; CTA-929C8.5-001; OTTHUMT00000320632.1; NONHSAT084581
Alternative gene names: XLOC_014196; linc-HSCB-7; ENSG00000233574; CTA-929C8.5; ENSG00000233574.1; OTTHUMG00000150952.1; AL020994.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.9156 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRYBA4-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYBA4-7:1
3.1 lnc-CRYBA4-7:1
4.0 lnc-CRYBA4-7:1
4.1 lnc-CRYBA4-7:1
5.0 lnc-CRYBA4-7:1
5.1 lnc-CABIN1-64:1
5.2 lnc-CRYBA4-7:1