Transcript: lnc-CRYBB1-1:1

Basic information

LNCipedia transcript ID: lnc-CRYBB1-1:1 
LNCipedia gene ID: lnc-CRYBB1-1
Ensembl Gene ID: ENSG00000206028
Ensembl Transcript ID: ENST00000382641
Location (hg38): chr22:26667693-26672654
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2613 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029347; ENST00000382641; ENST00000382641.1; CTA-373H7.7-001; OTTHUMT00000320776.1; NONHSAT084533
Alternative gene names: XLOC_014327; linc-CRYBB1-1; ENSG00000206028; CTA-373H7.7; ENSG00000206028.1; OTTHUMG00000150982.1; Z99774.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.4583 non-coding 
CPAT coding probability 60.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CRYBB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYBB1-1:1
3.1 lnc-CRYBB1-1:1
4.0 lnc-CRYBB1-1:1
4.1 lnc-CRYBB1-1:1
5.0 lnc-CRYBB1-1:1
5.1 lnc-PITPNB-22:3
5.2 lnc-CRYBB1-1:1