Transcript: lnc-CSF2RB-1:1

Basic information

LNCipedia transcript ID: lnc-CSF2RB-1:1 
LNCipedia gene ID: lnc-CSF2RB-1
Ensembl Gene ID: ENSG00000215403
Ensembl Transcript ID: ENST00000400221
RefSeq ID: NR_038954
Location (hg38): chr22:36965248-36968172
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 992 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00029422; ENST00000400221.1; LL22NC01-81G9.3-001; OTTHUMT00000318811.1; NONHSAT085136; NR_038954; NR_038954.1
Alternative gene names: XLOC_014231; linc-MPST; ENSG00000215403.1; LL22NC01-81G9.3; OTTHUMG00000150539.1; Z82180.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.0282 non-coding 
CPAT coding probability 13.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSF2RB-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSF2RB-1:1
3.1 lnc-CSF2RB-1:1
4.0 lnc-CSF2RB-1:1
4.1 lnc-CSF2RB-1:1
5.0 lnc-CSF2RB-1:1
5.1 lnc-MCM5-46:1
5.2 lnc-CSF2RB-1:1