Transcript: lnc-CSGALNACT1-1:1

Basic information

LNCipedia transcript ID: lnc-CSGALNACT1-1:1 
LNCipedia gene ID: lnc-CSGALNACT1-1
Ensembl Gene ID: ENSG00000253280
Ensembl Transcript ID: ENST00000521016
Location (hg38): chr8:19254241-19257334
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 362 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521016; ENST00000521016.1; RP11-618M23.4-001; OTTHUMT00000374894.1; NONHSAT125371
Alternative gene names: ENSG00000253280; RP11-618M23.4; ENSG00000253280.1; OTTHUMG00000163718.1; AC068880.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.3451 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSGALNACT1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSGALNACT1-1:1
3.1 lnc-CSGALNACT1-1:1
4.0 lnc-CSGALNACT1-1:1
4.1 lnc-CSGALNACT1-1:1
5.0 lnc-CSGALNACT1-1:1
5.1 lnc-EGR3-34:1
5.2 lnc-CSGALNACT1-1:1