Transcript: lnc-CSGALNACT1-2:1

Basic information

LNCipedia transcript ID: lnc-CSGALNACT1-2:1 
LNCipedia gene ID: lnc-CSGALNACT1-2
Location (hg38): chr8:19922748-19925169
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 313 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014943; NONHSAT125388
Alternative gene names: XLOC_007017; linc-CSGALNACT1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.8228 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSGALNACT1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSGALNACT1-2:1
3.1 lnc-CSGALNACT1-2:1
4.0 lnc-CSGALNACT1-2:1
4.1 lnc-CSGALNACT1-2:1
5.0 lnc-CSGALNACT1-2:1
5.1 lnc-EGR3-32:1
5.2 lnc-CSGALNACT1-2:1