Transcript: lnc-CSNK1G1-1:3

Basic information

LNCipedia transcript ID: lnc-CSNK1G1-1:3 
LNCipedia gene ID: lnc-CSNK1G1-1
Location (hg38): chr15:64365944-64373771
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 748 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000559280.1; CTD-2116N17.1-003; OTTHUMT00000418696.1; NONHSAT046662
Alternative gene names: ENSG00000259316.1; CTD-2116N17.1; OTTHUMG00000172470.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.8833 non-coding 
CPAT coding probability 14.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0101-1:2
4.0 lnc-CSNK1G1-1:3
4.1 lnc-CSNK1G1-1:3
5.0 lnc-CSNK1G1-1:3
5.1 lnc-TIPIN-59:3
5.2 lnc-CSNK1G1-1:3