Transcript: lnc-CSNK1G2-1:3

Basic information

LNCipedia transcript ID: lnc-CSNK1G2-1:3 
LNCipedia gene ID: lnc-CSNK1G2-1
Location (hg38): chr19:1940872-1941332
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 461 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expRegAs_chr19_581_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.134 non-coding 
CPAT coding probability 16.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G2-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCAMP4-1:1
4.0 lnc-CSNK1G2-1:3
4.1 lnc-CSNK1G2-1:3
5.0 lnc-CSNK1G2-1:3
5.1 lnc-RPL36-110:1
5.2 lnc-CSNK1G2-1:3