Transcript: lnc-CSNK1G3-4:1

Basic information

LNCipedia transcript ID: lnc-CSNK1G3-4:1 
LNCipedia gene ID: lnc-CSNK1G3-4
Location (hg38): chr5:124729710-124730155
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 446 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000502467.1; RP11-436H11.3-001; OTTHUMT00000372358.1; NONHSAT103532
Alternative gene names: ENSG00000250530.1; RP11-436H11.3; OTTHUMG00000163252.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.3646 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G3-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-43D2.2.1-3:1
4.0 lnc-RP11-43D2.2.1-3:1
4.1 lnc-RP11-43D2.2.1-3:1
5.0 lnc-RP11-43D2.2.1-3:1
5.1 lnc-PDLIM4-130:1
5.2 lnc-CSNK1G3-4:1