Transcript: lnc-CSNK1G3-6:1

Basic information

LNCipedia transcript ID: lnc-CSNK1G3-6:1 
LNCipedia gene ID: lnc-CSNK1G3-6
Location (hg38): chr5:124737399-124738005
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 607 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000505538.1; RP11-436H11.6-001; OTTHUMT00000372355.1; NONHSAT103535
Alternative gene names: ENSG00000249643.1; RP11-436H11.6; OTTHUMG00000163249.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -274.1419 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G3-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-43D2.2.1-5:1
4.0 lnc-RP11-43D2.2.1-5:1
4.1 lnc-RP11-43D2.2.1-5:1
5.0 lnc-RP11-43D2.2.1-5:1
5.1 lnc-PDLIM4-128:1
5.2 lnc-CSNK1G3-6:1