Transcript: lnc-CSPG4-2:1

Basic information

LNCipedia transcript ID: lnc-CSPG4-2:1 
LNCipedia gene ID: lnc-CSPG4-2
Ensembl Gene ID: ENSG00000261043
Ensembl Transcript ID: ENST00000561777
Location (hg38): chr15:75759501-75762405
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2905 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561777.1; MIR4313-001; OTTHUMT00000421198.1; NONHSAT047373
Alternative gene names: ENSG00000261043.1; MIR4313; OTTHUMG00000172896.1; ENSG00000261043.2; ENSG00000261043.3; RP11-24M17.6; ENSG00000261043.4; ENSG00000261043.5; AC019294.4; AC019294.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.7517 non-coding 
CPAT coding probability 23.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSPG4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CSPG4-2:1
4.0 lnc-CSPG4-2:1
4.1 lnc-CSPG4-2:1
5.0 lnc-CSPG4-2:1
5.1 lnc-PEAK1-27:1
5.2 lnc-CSPG4-2:1