Transcript: lnc-CSRNP3-12:4

Basic information

LNCipedia transcript ID: lnc-CSRNP3-12:4 
LNCipedia gene ID: lnc-CSRNP3-12
Ensembl Gene ID: ENSG00000236107
Ensembl Transcript ID: ENST00000630020
Location (hg38): chr2:166149181-166171544
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 550 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000630020.1
Alternative gene names: ENSG00000236107.7; AC010127.3; ; AC010127.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -235.5439 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSRNP3-12:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TTC21B-AS1:30
4.1 TTC21B-AS1:30
5.0 TTC21B-AS1:30
5.1 lnc-PHOSPHO2-23:21
5.2 lnc-CSRNP3-12:4