Transcript: lnc-CSRNP3-9:7

Basic information

LNCipedia transcript ID: lnc-CSRNP3-9:7 
LNCipedia gene ID: lnc-CSRNP3-9
Ensembl Gene ID: ENSG00000235192
Ensembl Transcript ID: ENST00000425688
Location (hg38): chr2:165794851-165810010
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 779 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003042; ENST00000425688; ENST00000425688.1; AC009495.2-001; OTTHUMT00000333593.1; NONHSAT075259
Alternative gene names: XLOC_001738; linc-XIRP2-4; ENSG00000235192; AC009495.2; ENSG00000235192.1; OTTHUMG00000154036.1; ; AC009495.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.594 non-coding 
CPAT coding probability 8.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSRNP3-9:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSRNP3-1:1
3.1 lnc-CSRNP3-1:1
4.0 TTC21B-AS1:3
4.1 TTC21B-AS1:3
5.0 TTC21B-AS1:3
5.1 lnc-PHOSPHO2-28:7
5.2 lnc-CSRNP3-9:7