Transcript: lnc-CST9L-2:1

Basic information

LNCipedia transcript ID: lnc-CST9L-2:1 
LNCipedia gene ID: lnc-CST9L-2
Ensembl Gene ID: ENSG00000260202
Ensembl Transcript ID: ENST00000564051
Location (hg38): chr20:23516884-23519031
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2148 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564051.2
Alternative gene names: ENSG00000260202.2; RP3-333B15.4; AL109954.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -52.4 non-coding 
CPAT coding probability 2.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CST9L-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CST9LP1-2:5
4.1 lnc-CST9LP1-2:5
5.0 lnc-CST9LP1-2:5
5.1 lnc-CST4-4:1
5.2 lnc-CST9L-2:1