Transcript: lnc-CST9L-2:2

Basic information

LNCipedia transcript ID: lnc-CST9L-2:2 
LNCipedia gene ID: lnc-CST9L-2
Location (hg38): chr20:23516884-23518069
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1186 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000564051.1; RP3-333B15.4-001; OTTHUMT00000430532.1; NONHSAT079068
Alternative gene names: ENSG00000260202.1; RP3-333B15.4; OTTHUMG00000175576.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.4 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CST9L-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CST9LP1-1:1
4.0 lnc-CST9LP1-2:6
4.1 lnc-CST9LP1-2:6
5.0 lnc-CST9LP1-2:6
5.1 lnc-CST4-4:2
5.2 lnc-CST9L-2:2