Transcript: lnc-CTAGE1-9:1

Basic information

LNCipedia transcript ID: lnc-CTAGE1-9:1 
LNCipedia gene ID: lnc-CTAGE1-9
Ensembl Gene ID: ENSG00000265943
Ensembl Transcript ID: ENST00000578831
Location (hg38): chr18:22699481-22933764
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 570 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578831.1; RP11-739L10.1-001; OTTHUMT00000446412.1; NONHSAT058623
Alternative gene names: ENSG00000265943.1; RP11-739L10.1; OTTHUMG00000179447.1; AC090912.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.2512 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM241-1:1
4.0 lnc-TMEM241-8:1
4.1 lnc-CTAGE1-1:6
5.0 lnc-CTAGE1-1:6
5.1 lnc-SMAD2-198:1
5.2 lnc-CTAGE1-9:1