Transcript: lnc-CTAGE1-9:17

Basic information

LNCipedia transcript ID: lnc-CTAGE1-9:17 
LNCipedia gene ID: lnc-CTAGE1-9
Ensembl Gene ID: ENSG00000266850
Ensembl Transcript ID: ENST00000581274
Location (hg38): chr18:22723493-22786873
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581274.1; RP11-370A5.1-003; OTTHUMT00000446414.1; NONHSAT058625
Alternative gene names: ENSG00000266850.1; RP11-370A5.1; OTTHUMG00000179448.1; AC090912.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.6577 non-coding 
CPAT coding probability 4.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE1-9:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTAGE1-1:2
4.0 lnc-TMEM241-1:4
4.1 lnc-CTAGE1-1:22
5.0 lnc-CTAGE1-1:22
5.1 lnc-SMAD2-198:17
5.2 lnc-CTAGE1-9:17