Transcript: lnc-CTAGE1-9:18

Basic information

LNCipedia transcript ID: lnc-CTAGE1-9:18 
LNCipedia gene ID: lnc-CTAGE1-9
RefSeq ID: NR_110782
Location (hg38): chr18:22723491-22786837
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110782; NR_110782.1
Alternative gene names: LOC101927571


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.6577 non-coding 
CPAT coding probability 4.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE1-9:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTAGE1-1:5
4.0 lnc-TMEM241-1:5
4.1 lnc-CTAGE1-1:23
5.0 lnc-CTAGE1-1:23
5.1 lnc-SMAD2-198:18
5.2 lnc-CTAGE1-9:18