Transcript: lnc-CTAGE1-9:19

Basic information

LNCipedia transcript ID: lnc-CTAGE1-9:19 
LNCipedia gene ID: lnc-CTAGE1-9
Ensembl Gene ID: ENSG00000266850
Ensembl Transcript ID: ENST00000579356
Location (hg38): chr18:22723491-22778173
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579356.1; RP11-370A5.1-002; OTTHUMT00000446413.1; NONHSAT058624
Alternative gene names: ENSG00000266850.1; RP11-370A5.1; OTTHUMG00000179448.1; AC090912.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.6577 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE1-9:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTAGE1-1:3
4.0 lnc-TMEM241-1:6
4.1 lnc-CTAGE1-1:24
5.0 lnc-CTAGE1-1:24
5.1 lnc-SMAD2-198:19
5.2 lnc-CTAGE1-9:19