Transcript: lnc-CTAGE5-3:1

Basic information

LNCipedia transcript ID: lnc-CTAGE5-3:1 
LNCipedia gene ID: lnc-CTAGE5-3
Ensembl Gene ID: ENSG00000258480
Ensembl Transcript ID: ENST00000557101
Location (hg38): chr14:40387558-40389140
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557101; ENST00000557101.1; RP11-662J14.2-001; OTTHUMT00000409990.1; NONHSAT036558
Alternative gene names: ENSG00000258480; RP11-662J14.2; ENSG00000258480.1; OTTHUMG00000170678.1; AL352977.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -256.7877 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTAGE5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTAGE5-3:1
3.1 lnc-CTAGE5-3:1
4.0 lnc-CTAGE5-3:1
4.1 lnc-CTAGE5-3:1
5.0 lnc-CTAGE5-3:1
5.1 lnc-BRMS1L-82:1
5.2 lnc-CTAGE5-3:1