Transcript: lnc-CTDSP2-1:1

Basic information

LNCipedia transcript ID: lnc-CTDSP2-1:1 
LNCipedia gene ID: lnc-CTDSP2-1
Location (hg38): chr12:57869836-57896484
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3508 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020255; NONHSAT028989
Alternative gene names: XLOC_010101; linc-CTDSP2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.3993 non-coding 
CPAT coding probability 17.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTDSP2-1:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTDSP2-1:1
3.1 lnc-CTDSP2-1:1
4.0 lnc-CTDSP2-1:1
4.1 lnc-CTDSP2-1:1
5.0 lnc-CTDSP2-1:1
5.1 lnc-PMEL-74:1
5.2 lnc-CTDSP2-1:1