Transcript: lnc-CTDSP2-1:2

Basic information

LNCipedia transcript ID: lnc-CTDSP2-1:2 
LNCipedia gene ID: lnc-CTDSP2-1
Location (hg38): chr12:57869835-57896482
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4053 bp
Exons: 5
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000499481
Alternative gene names: ENSG00000245651


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.3993 non-coding 
CPAT coding probability 17.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTDSP2-1:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTDSP2-1:2
3.1 lnc-CTDSP2-1:2
4.0 lnc-CTDSP2-1:2
4.1 lnc-CTDSP2-1:2
5.0 lnc-CTDSP2-1:2
5.1 lnc-PMEL-74:2
5.2 lnc-CTDSP2-1:2