Transcript: lnc-CTDSP2-1:3

Basic information

LNCipedia transcript ID: lnc-CTDSP2-1:3 
LNCipedia gene ID: lnc-CTDSP2-1
Ensembl Gene ID: ENSG00000245651
Ensembl Transcript ID: ENST00000499481
Location (hg38): chr12:57869835-57896482
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3507 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499481; ENST00000499481.2; RP11-620J15.2-001; OTTHUMT00000409363.1
Alternative gene names: ENSG00000245651; RP11-620J15.2; ENSG00000245651.2; OTTHUMG00000170485.2; AC083805.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.3993 non-coding 
CPAT coding probability 17.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTDSP2-1:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTDSP2-1:3
3.1 lnc-CTDSP2-1:3
4.0 lnc-CTDSP2-1:3
4.1 lnc-CTDSP2-1:3
5.0 lnc-CTDSP2-1:3
5.1 lnc-PMEL-74:3
5.2 lnc-CTDSP2-1:3