Transcript: lnc-CTDSP2-2:7

Basic information

LNCipedia transcript ID: lnc-CTDSP2-2:7 
LNCipedia gene ID: lnc-CTDSP2-2
Ensembl Gene ID: ENSG00000257698
Ensembl Transcript ID: ENST00000553102
Location (hg38): chr12:57935074-57936063
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 705 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553102.1; RP11-620J15.3-003; OTTHUMT00000409388.1; NONHSAT029005
Alternative gene names: ENSG00000257698.1; RP11-620J15.3; OTTHUMG00000170492.1; AC084033.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.1656 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTDSP2-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTDSP2-2:7
4.0 lnc-CTDSP2-2:7
4.1 lnc-CTDSP2-2:7
5.0 lnc-CTDSP2-2:7
5.1 lnc-PMEL-75:22
5.2 lnc-CTDSP2-2:7