Transcript: lnc-CTDSPL2-2:1

Basic information

LNCipedia transcript ID: lnc-CTDSPL2-2:1 
LNCipedia gene ID: lnc-CTDSPL2-2
Ensembl Gene ID: ENSG00000259659
Ensembl Transcript ID: ENST00000558006
Location (hg38): chr15:44557829-44559188
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 653 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558006.1; RP11-151N17.1-001; OTTHUMT00000415586.1; NONHSAT042170
Alternative gene names: ENSG00000259659.1; RP11-151N17.1; OTTHUMG00000171876.1; AC009996.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.1881 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTDSPL2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTDSPL2-2:1
4.0 lnc-CTDSPL2-2:1
4.1 lnc-CTDSPL2-2:1
5.0 lnc-CTDSPL2-2:1
5.1 lnc-CCNDBP1-25:1
5.2 lnc-CTDSPL2-2:1