Transcript: lnc-CTNNAL1-1:2

Basic information

LNCipedia transcript ID: lnc-CTNNAL1-1:2 
LNCipedia gene ID: lnc-CTNNAL1-1
Location (hg38): chr9:109036020-109038210
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 555 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT133931
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1215.7004 coding 
CPAT coding probability 11.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CTNNAL1-1:2 yes no no no

Available literature

  1. Koufariotis (2015), A catalogue of novel bovine long noncoding RNA across 18 tissues., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTNNAL1-1:2
4.0 lnc-CTNNAL1-1:2
4.1 lnc-CTNNAL1-1:2
5.0 lnc-CTNNAL1-1:2
5.1 lnc-SLC46A2-64:2
5.2 lnc-CTNNAL1-1:2