Transcript: lnc-CTNNBL1-1:1

Basic information

LNCipedia transcript ID: lnc-CTNNBL1-1:1 
LNCipedia gene ID: lnc-CTNNBL1-1
Ensembl Gene ID: ENSG00000204117
Ensembl Transcript ID: ENST00000373508
RefSeq ID: NR_040021
Location (hg38): chr20:37676910-37683234
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2112 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000373508; ENST00000373508.1; RP4-640H8.2-001; OTTHUMT00000276667.1; NONHSAT079631; NR_040021; NR_040021.1
Alternative gene names: ENSG00000204117; RP4-640H8.2; ENSG00000204117.1; OTTHUMG00000140219.1; AL162293.1; LOC100287792


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.8498 non-coding 
CPAT coding probability 23.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTNNBL1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTNNBL1-1:1
3.1 lnc-CTNNBL1-1:1
4.0 lnc-CTNNBL1-1:1
4.1 lnc-CTNNBL1-1:1
5.0 lnc-CTNNBL1-1:1
5.1 lnc-DLGAP4-27:1
5.2 lnc-CTNNBL1-1:1