Transcript: lnc-CTSB-3:2

Basic information

LNCipedia transcript ID: lnc-CTSB-3:2 
LNCipedia gene ID: lnc-CTSB-3
Ensembl Gene ID: ENSG00000255046
Ensembl Transcript ID: ENST00000531395
Location (hg38): chr8:11797928-11802512
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 811 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT125085; ENST00000531395.1
Alternative gene names: ENSG00000255046.1; RP11-297N6.4; AC069185.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.952 non-coding 
CPAT coding probability 20.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSB-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-297N6.4.1-1:1
4.0 lnc-RP11-297N6.4.1-1:1
4.1 lnc-RP11-297N6.4.1-1:1
5.0 lnc-RP11-297N6.4.1-1:1
5.1 lnc-PINX1-28:2
5.2 lnc-CTSB-3:2